Technical Specifications - Genomic Profiling

Genedata Expressionist® for Genomic Profiling is specifically designed to process, analyze and visualize massive amounts of data in the context of genomic positions. It supports experimental data from all major vendors and technology platforms. With an innovative and extremely flexible genomic browser Genedata Expressionist puts next-generation sequencing and other high throughput genomic data into the hands of scientists, biologists, and statisticians alike. Genedata Expressionist comes with a carefully selected set of algorithms providing the power and flexibility to answer most relevant questions, including integrated analysis of the genome, transcriptome, and epigenome.

Genedata Expressionist for Genomic Profiling is an open and flexible platform that supports all major vendors, instruments, technologies.

Vendor Formats:      

Genomes, Annotations and Libraries:          

Data Integration:

 

 

 

 

 

  • Affymetrix
  • Agilent
  • Axon GenePix     
  • CombiMatrix
  • Fluidigm
  • Illumina
  • Ion Torrent
  • Life Technologies
  • NanoString
  • Nimblegen
  • Pacific Biosciences
  • Roche 454   
  • TaqMan RT-PCR
  • Single-end reads
  • Paired-end reads
  • Bisulfite sequencing, including RRBS
  • BED, GTF, GFF3
  • dbSNP, RefSeq, Ensembl
  • GEO
  • IPA
  • Metacore
  • Public API

 

 

 

 

Workflow System
Comprehensive and Interactive

Genedata Expressionist for Genomic Profiling - Workflow System

The proven Genedata Expressionist workflow system simplifies and automates even the most complex analyses. A workflow consists of several activities with each activity representing a functional task or algorithm. You can freely combine activities to build new workflows, save them, and share the workflows with other scientists. Comprehensive and interactive visual feedback at every processing step allows for high flexibility and ease-of-use.

Genome Browser
Transparent Analysis in Real-Time

Genedata Expressionist for Genomic Profiling - Genome Browser

Genedata Expressionist for Genomic Profiling visualization tools display raw and processed data down to base-pair resolution. This interactive visualization allows for real-time quality control and result validation.

Statistical Toolbox
Bringing Statistics to Biologists

Genedata Expressionist for Genomic Profiling - Statistical Analysis

Genedata Expressionist for Genomic Profiling helps to bridge the gap between biology and statistics by making advanced statistical tools accessible to a wide range of users. The software provides a range of powerful data analysisl tools designed to support statistical analysis of even the most complex life science data. Statistics tool including t-Test, ANOVA, linear models, Principal Components Analysis (PCA), Partial Least Square analysis (PLS), Self-Organizing Maps (SOM), and clustering methods combined with tools for data normalization, transformation, and imputation.

Unmatched Scalability
Massive Amounts of Data

Genedata Expressionist for Genomic Profiling sets new standards for NGS data analysis. In minutes instead of hours, the system simultaneously analyzes transcriptomics, copy number variation, variant, and DNA methylation data from a large number of cancer cell lines. It also features a flexible and interactive genomic browser that can visualize terabytes of data and provide real-time feedback at every processing step.

System Requirements
Cost-Efficient Client-Server Solution

A server can be installed on a wide range of Linux systems. The client software runs on all recent versions of MS Windows. Please contact Genedata for the most recent system requirements.