2009

Archive

2009

2008

2007

 

The 2009 peer-reviewed publications listed below each acknowledge support from Genedata.

DNA Binding by Estrogen Receptor-  Is Essential for the Transcriptional Response to Estrogen in the Liver and the Uterus

Dörthe L. Ahlbory-Dieker, Brenda D. Stride, Gabriele Leder, Jenny Schkoldow, Susanne Trölenberg, Henrik Seidel, Christiane Otto, Anette Sommer, Malcolm G. Parker, Günther Schütz, and Tim M. Wintermantel

Mol. Endocrinol., Oct 2009; 23: 1544 - 1555

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Molecular Characterization of Preneoplastic Lesions Provides Insight on the Development of Renal Tumors

Kerstin Stemmer, Heidrun Ellinger-Ziegelbauer, Hans-Jürgen Ahr, and Daniel R. Dietrich

Am. J. Pathol., Oct 2009; 175: 1686 - 1698

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Identity of the growth-limiting nutrient strongly affects storage carbohydrate accumulation in anaerobic chemostat cultures of Saccharomyces cerevisiae

Lucie A. Hazelwood, Michael C. Walsh, Marijke A.H. Luttik, Pascale Daran-Lapujade, Jack T. Pronk, and Jean-Marc Daran

Appl. Envir. Microbiol., Sep 2009; doi:10.1128/AEM.01464-09

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Transcriptome and proteome analysis of chinese hamster ovary cells under low temperature and butyrate treatment

Anne Kantardjieff, Nitya M. Jacob, Joon Chong Yee, Eyal Epstein, Yee-Jiun Kok, Robin Philp, Michael Betenbaugh, Wei-Shou Hu Journal of Biotechnology (Sep 2009)

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Hypoxic transcription gene profiles under the modulation of nitric oxide in nuclear run on-microarray and proteomics

Igwe EI, Essler S, Al-Furoukh N, Dehne N, Brüne B

BMC Genomics 2009, 10:408 (2 September 2009)

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Uncovering the Arabidopsis thaliana nectary transcriptome: investigation of differential gene expression in floral nectariferous tissues

Kram, Brian W / Xu, Wayne W / Carter, Clay J ,

BMC Plant Biology, 9, p.92-92, Jul 2009

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Global analysis of nuclear receptor expression and dysregulation in human osteoarthritic articular cartilage

Collins-Racie, L.A., Yang, Z., Arai, M., Li, N., Majumdar, M.K., Nagpal, S., Mounts, W.M., (...), LaVallie, E.R.

Osteoarthritis and Cartilage, 17 (7), p.832-842, Jul 2009

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Spleen Tyrosine Kinase Is Overexpressed and Represents a Potential Therapeutic Target in Chronic Lymphocytic Leukemia

Maike Buchner, Simon Fuchs, Gabriele Prinz, Dietmar Pfeifer, Kilian Bartholomé, Meike Burger, Nina Chevalier, Laurent Vallat, Jens Timmer, John G. Gribben, Hassan Jumaa, Hendrik Veelken, Christine Dierks, and Katja Zirlik

Cancer Res., Jul 2009; 69: 5424 - 5432

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LOX-1-dependent transcriptional regulation in response to oxidized LDL treatment of human aortic endothelial cells

Mark D. Mattaliano, Christine Huard, Wei Cao, Andrew A. Hill, Wenyan Zhong, Robert V. Martinez, Doug C. Harnish, Janet E. Paulsen, and Heather H. Shih

Am J Physiol Cell Physiol, Jun 2009; 296: C1329 - C1337

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Genomic profiling of developing cardiomyocytes from recombinant murine embryonic stem cells reveals regulation of transcription factor clusters

Michael J. Seewald, Peter Ellinghaus, Astrid Kassner, Ines Stork, Martina Barg, Sylvia Niebrügge, Stefan Golz, Holger Summer, Robert Zweigerdt, Eva-Maria Schräder, Samantha Feicht, Kornelia Jaquet, Stephanie Reis, Reiner Körfer, and Hendrik Milting

Physiol Genomics, Jun 2009; 38: 7 - 15

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WNT signaling enhances breast cancer cell motility and blockade of the WNT pathway by sFRP1 suppresses MDA-MB-231 xenograft growth

Yutaka Matsuda,  Thomas Schlange, Edward J. Oakeley,  Anne Boulay, Nancy E. Hynes

Breast Cancer Research, 11 (3), p.R32, May 2009
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Nucleophosmin as a Candidate Prognostic Biomarker of Ewing's Sarcoma Revealed by Proteomics

Kazutaka Kikuta, Naobumi Tochigi, Tadakazu Shimoda, Hiroki Yabe, Hideo Morioka, Yoshiaki Toyama, Ako Hosono, Yasuo Beppu, Akira Kawai, Setsuo Hirohashi, and Tadashi Kondo

Clin. Cancer Res., Apr 2009; 15: 2885 - 2894

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Pleiotropic combinatorial transcriptomes of human breast cancer cells exposed to mixtures of dietary phytoestrogens

Dip, R., Lenz, S., Gmuender, H., Naegeli, H.

Food and Chemical Toxicology, 47 (4), p.787-795, Apr 2009

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Characterization of oxylipins and dioxygenase genes in the asexual fungus Aspergillus niger

Mayken W Wadman, Ronald P. de Vries, Stefanie IC Kalkhove, Gerrit A. Veldink, and Johannes FG Vliegenthart

BMC Microbiology, 9, p.59-59, Mar 2009

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TWIST-1 Is Overexpressed in Neoplastic Choroid Plexus Epithelial Cells and Promotes Proliferation and Invasion

Martin Hasselblatt, Sonja Mertsch, Björn Koos, Barbara Riesmeier, Heike Stegemann, Astrid Jeibmann, Manuel Tomm, Nicole Schmitz, Brigitte Wrede, Johannes E. Wolff, Wei Zheng, and Werner Paulus

Cancer Res., Mar 2009; 69: 2219 – 2223

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A combination of metabolome and transcriptome analyses reveals new targets of the Corynebacterium glutamicum nitrogen

Buchinger, S., Strosser, J., Rehm, N., Hanszler, E., Hans, S., Bathe, B., Schomburg, D., (...), Burkovski, A.

Journal of Biotechnology, 140 (1), p.68-74, Mar 2009

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Effective lead selection for improved protein production in Aspergillus niger based on integrated genomics

Jacobs, D.I., Olsthoorn, M.M.A., Maillet, I., Akeroyd, M., Breestraat, S.. Donkers, S., van der Hoeven, R.A.M., (...), Lapointe, T.

Fungal Genetics and Biology, 46 (1), p.S141-S152, Mar 2009

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LXR ligand lowers LDL cholesterol in primates, is lipid neutral in hamster, and reduces atherosclerosis in mouse

Elaine M. Quinet, Michael D. Basso, Anita R. Halpern, David W. Yates, Robert J. Sheffan, Valerie Clerin, Christine Resmini, James C. Keith, Thomas J. Berrodin, Irene Feingold, Wenyan Zhong, Helen B. Hartman, Mark J. Evans, Stephen J. Gardell, Elizabeth DiBlasio-Smith, William M. Mounts, Edward R. LaVallie, Jay Wrobel, Ponnal Nambi, and George P. Vlasuk

J. Lipid Res., Mar 2009; doi:10.1194/jlr.M900037-JLR200

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Prediction of Clinical Outcome in Multiple Lung Cancer Cohorts by Integrative Genomics: Implications for Chemotherapy Selection

Philippe Broët, Sophie Camilleri-Broët, Shenli Zhang, Marco Alifano, Dhinoth Bangarusamy, Maxime Battistella, Yonghui Wu, Marianne Tuefferd, Jean-François Régnard, Elaine Lim, Patrick Tan, and Lance D. Miller

Cancer Res., Feb 2009; 69: 1055 - 1062

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Recovery of microarray-quality RNA from frozen EDTA blood samples

Beekman, J.M., Reischl, J., Henderson, D., Bauer, D., Ternes, R., Pena, C., Lathia, C., Heubach, J.F.

Journal of Pharmacological and Toxicological Methods, 59 (1), p.44-49, Jan 2009

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Acetohydroxyacid Synthase, a Novel Target for Improvement of L-Lysine Production by Corynebacterium glutamicum

Bastian Blombach, Stephan Hans, Brigitte Bathe, and Bernhard J. Eikmanns

Appl. Envir. Microbiol., January 15, 2009; 75: 419 - 427

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Differences in the Gene Expression Profile of Matrix Metalloproteinases (MMPs) and their Inhibitors (TIMPs) in Primary Colorectal Tumors and their Synchronous Liver Metastases

Gentner B, Wein A, Croner RS, Zeittrager I, Wirtz RM, Roedel F, Dimmler A, Dorlaque L, Hohenberger W, Hahn EG, Brueckl WM

Anticancer Res, January 2009; 29: 67 - 74

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Microarray Analysis of Lymphatic Tissue Reveals Stage-Specific, Gene Expression Signatures in HIV-1 Infection

Qingsheng Li, Anthony J. Smith, Timothy W. Schacker, John V. Carlis, Lijie Duan, Cavan S. Reilly, and Ashley T. Haase

J. Immunol., Aug 2009; 183: 1975 - 1982

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Global gene expression profiling of progesterone receptor modulators in T47D cells provides a new classification system

Wiebke Afhüppe, Anette Sommer, Jörg Müller, Wolfgang Schwede, Ulrike Fuhrmann, Carsten Möller

The Journal of Steroid Biochemistry and Molecular Biology, Volume 113, Issues 1-2, January 2009, Pages 105-115

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